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Home Meal Prep Meal Prep Breakfast
5
/5
40 minutes minutes

Quinoa Egg Muffins (High Protein)

Gluten Free Gluten Free Low Carb Low Carb Nut Free Nut Free Vegetarian Vegetarian Freezer Friendly Freezer Meal Prep Meal Prep
Jump to Recipe
By: Annie69 Comments
Posted: 3/9/20 Updated: 8/23/20

This post may contain affiliate links. Please read our disclosure policy.

Quinoa egg muffins are super simple to make with just a few ingredients. This breakfast muffin recipe is full of protein and customizable to suit your tastes. It’s gluten-free, freezer-friendly and perfect for meal prep.

If you are looking for a high protein, portable breakfast that is easy to prep, egg muffs are perfect for you! We love them so much that I have seven egg muffin recipes (so far) on the blog!

pulling the Quinoa Egg Muffins apart

These quinoa breakfast egg muffins pack in some extra protein and nutrients thanks to some sneaky quinoa (and I'm betting you would never even know it's there!).

Not only are they quick to prep, but they are easy to customize, so if you don't like mushrooms or sun dried tomatoes, you can swap them out easily for your favorite veggies.

Reasons you’ll ♡ these quinoa egg muffins

  • they’re get an extra boost of protein, with 7 g per muffin
  • you can customize the veggies based on what you have in the fridge
  • they work great for meal prep and are both fridge and freezer-friendly

Recipe Video

Wondering how these muffins come together? Watch the quick video below to see how it happens! You can find more recipe videos on my YouTube channel.

Don't forget to pin this post to save it for later!

ingredients required for meal prep egg muffins

Let’s Talk Ingredients

For this Quinoa Egg Breakfast Muffin recipe, you’ll need:

  • Eggs – I have not tested the recipe with an egg substitute, so do not know if it will work.
  • Quinoa – This recipe uses pre-cooked quinoa, which is a quick way to add extra protein and nutrients.
  • Swiss cheese – I like Swiss in my muffins, but feel free to use a different variety such as cheddar or mozzarella.
  • Veggies – I use sun dried tomatoes and mushrooms in this recipe, but feel free to use any veggies you like! Just make sure they’re chopped small.
  • For flavor – Just a little salt and pepper to really let the other ingredients shine.

bowl with ingredients for quinoa muffins

Meal Prep Tips

Quinoa egg muffins are perfect for meal prep! Here’s how to make the most of your prep:

  • Chop the veggies very small so that they fully cook through while the eggs bake.
  • Be sure to cool the quinoa before stirring it into the eggs.
  • You may use silicone or parchment muffin liners, or spray the pan with oil. Avoid using paper liners; they will stick to the eggs.
  • The egg muffins keep fresh in the fridge for up to 4 days, or frozen for up to 3 months.

Find my favorite muffin tins, mixing bowl, and more in my shop!

stack of three quinoa egg muffins

Can I skip the Quinoa?

Sure! However, to avoid ending up with a smaller batch, you may want to add 2 or 3 more eggs.

Can I swap the mushrooms or sun dried tomatoes?

Yes, you can use almost any small veggie if you chop it finely. Some of my faves are chopped spinach, bell peppers and cauliflower rice.

What is the best way to reheat egg muffins?

I recommend reheating muffins in the microwave. Place them on a paper towel-lined plate until heated through.

close up view of hand holding breakfast egg muffin

More Tasty Egg Recipes:

  • Healthy Freezer Breakfast Sandwiches
  • Meal Prep Baked Eggs
  • Sheet Pan Eggs
  • Herb & Zucchini Egg Bake Recipe
  • Breakfast Tacos (Meal Prep)

This post was originally published in 2015. It has been republished in 2020 with new photos, video and slight changes to the recipe.

Did you make this? Tag me on social @sweetpeasandsaffron and be sure to leave a comment and rate the recipe!

stack of three quinoa egg muffins on gray background

Quinoa Egg Muffins (High Protein)

5 from 11 votes
Prep Time: 10 minutes mins
Cook Time: 30 minutes mins
Total Time: 40 minutes mins
Print Rate
Quinoa egg muffins are super simple to make with just a few ingredients. This breakfast muffin recipe is full of protein and customizable to suit your tastes. It’s gluten-free, freezer-friendly and perfect for meal prep.
12 muffins

Ingredients

  • 6 eggs
  • ¼ teaspoon pepper
  • ¼ teaspoon salt
  • 1 cup quinoa (cooked + cooled completely)
  • 1 cup Swiss cheese (shredded- ¼ cup reserved for tops)
  • 1 cup mushrooms (chopped small)
  • ½ cup sundried tomatoes drained and chopped

Instructions 

  • Pre-heat oven to 350°F.
  • In a large bowl, whisk together eggs, salt and pepper. Stir in the remaining ingredients.
  • Spoon into a standard muffin pan lined with silicone or parchment muffin liners (*see note).
  • Sprinkle tops with remaining ¼ cup of cheese.
  • Bake for 20-25 min, until a knife inserted in the center of the muffin comes out clean. Mine were perfect at 22 minutes.

Storage

  • These egg muffins can be stored in a sealed container in the fridge for up to 5 days, or in the freezer for up to 3 months.
  • To re-heat- heat in the microwave on a paper towel-lined plate.

Tips:

* Muffins may stick to paper liners and greased muffin trays. Use parchment or silicone liners instead.
Flavor Variations:
Broccoli + Cheddar: replace the mushrooms, onions & sundried tomatoes with 1.5 cups broccoli florets (SMALL), replace the Swiss cheese with cheddar.
Zucchini + Feta + Dill: replace the mushrooms & sundried tomatoes with 1 cup shredded zucchini (let it dry on a paper towel for 10 min first), and replace ¾ cup of the Swiss cheese with crumbled feta (sprinkle tops with ¼ cup of cheddar/mozza). Replace salt & pepper with 1 teaspoon dried dill.

Video

Nutrition Information

Serving: 1muffin, Calories: 118kcal, Carbohydrates: 12g, Protein: 7g, Fat: 5g, Saturated Fat: 2g, Cholesterol: 97mg, Sodium: 143mg, Fiber: 1g, Sugar: 1g
Author: Annie Holmes
Course: Breakfast
Cuisine: American

© Sweet Peas & Saffron - Content and photographs are copyright protected. Sharing of this recipe is both encouraged and appreciated. Copying and/or pasting full recipes to any social media is strictly prohibited.

Did You Make This?Don't forget to leave a review below, and tag us on Instagram using @SweetPeasAndSaffron or #sweetpeasandsaffron
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Reader Interactions

5 from 11 votes (10 ratings without comment)

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Recipe Rating




  1. Lindsay M. says

    Posted on 5/18/16 at Posted on 5/18/16

    Hi Denise! These look fantastic. I can't have cheese, so do you know if that can be omitted and/or what I could use to replace it? Just a different ingredient like broccoli? Or is the cheese necessary as a binder? Thank you!

    Reply
    • Denise says

      Posted on 5/18/16 at Posted on 5/18/16

      Hi Lindsay! I haven't tried the recipe without cheese, but it should be fine without. You may end up with a few less muffins, and you may need to add additional seasoning. I hope you like them!

      Reply
  2. Sandi says

    Posted on 2/26/16 at Posted on 2/26/16

    The mushrooms look sautéed, but I don't see it mentioned. Do you just throw them in uncooked? I can't wait to try this. Seems like a spinach or broccoli variety would be good too! Keep the "grab and go" recipes coming!

    Reply
    • Denise says

      Posted on 2/26/16 at Posted on 2/26/16

      Hi Sandi! The mushrooms go into the muffins raw and cook through as they bake! And actually you can do the same with broccoli, I subbed the tomatoes and mushrooms for 1 1/2 cups of broccoli, but make sure to cut it quite small so that it cooks through. I hope you like them! And I have a make ahead breakfast burrito recipe going up in the next week or two, so stay tuned 😀

      Reply
  3. Tim Maunsell says

    Posted on 2/15/16 at Posted on 2/15/16

    Hi Denise, Made these last night and I am trying to combine as I am calorie counting with myFitnessPal website, so wanted to geet nutrient content.

    Reply
    • Denise says

      Posted on 2/15/16 at Posted on 2/15/16

      Hi Tim! I don't have the nutritional information for my recipes at the moment, however it is definitely something I'm looking into. I'm sorry about that!

      Reply
    • Denise says

      Posted on 2/24/16 at Posted on 2/24/16

      Hey Tim! I just updated the recipe with nutritional information (in the recipe card). 118 calories/muffin!

      Reply
      • Tim Maunsell says

        Posted on 3/11/16 at Posted on 3/11/16

        Many thanks Denise, I'm just about to make my second batch. Awesome snack.

        Reply
        • Denise says

          Posted on 3/11/16 at Posted on 3/11/16

          So glad you like them, Tim! Thanks for your nice comment 🙂

          Reply
  4. Sheena says

    Posted on 2/13/16 at Posted on 2/13/16

    These look absolutely delicious. Just wondering if you have the nutrition guide on how many calories etc.
    Thanks so much and can't wait to try these.

    Reply
    • Denise says

      Posted on 2/15/16 at Posted on 2/15/16

      Hi Sheena! Unfortunately, I currently don't have the nutritional information for my recipes, however it is something that I am looking into doing. Sorry about that!

      Reply
      • Denise says

        Posted on 2/24/16 at Posted on 2/24/16

        Hi Sheena! I've updated the nutritional information (in the note of the recipe). 118 calories per muffin!

        Reply
  5. Alexandra says

    Posted on 12/26/15 at Posted on 12/26/15

    Hey do you think these would work without the cheese?! Thanks!!

    Reply
    • Denise says

      Posted on 12/29/15 at Posted on 12/29/15

      Hi Alexandra, I answered you by e-mail already, but in case anyone else is wondering: I haven't tried it, but I'm sure they'd still be good. You will probably end up with a couple less muffins though. 😀

      Reply
  6. Cyndi - My Kitchen Craze says

    Posted on 8/22/15 at Posted on 8/22/15

    These are a genius idea!!! Love that they are freezer ready and you can literally grab and go. My kind of breakfast on a busy morning.

    Reply
  7. Laura @Petite Allergy Treats says

    Posted on 8/21/15 at Posted on 8/21/15

    Love make ahead breakfasts! These sound like the perfect way to stock up the freezer!

    Reply
  8. Denise says

    Posted on 8/21/15 at Posted on 8/21/15

    Yes! Totally, Arpita, mornings are so much easier when you don't have to worry about breakfast!

    Reply
  9. Shelby @ Go Eat and Repeat says

    Posted on 8/21/15 at Posted on 8/21/15

    I love that I can make these ahead! I'm the same way, during the week I have to wake up super early so I have no energy to make a big breakfast. These are definitely in my future!

    Reply
    • Denise says

      Posted on 8/21/15 at Posted on 8/21/15

      Early mornings are SO hard! I hope you like them, Shelby!

      Reply
  10. Andi @ The Weary Chef says

    Posted on 8/21/15 at Posted on 8/21/15

    These look like a pretty much perfect breakfast to me. I'll take three!

    Reply
    • Denise says

      Posted on 8/21/15 at Posted on 8/21/15

      Thanks, Andi! One definitely wasn't quite enough for me 😉

      Reply
  11. Jaren (Diary of a Recipe Collector) says

    Posted on 8/21/15 at Posted on 8/21/15

    Love make-ahead breakfast ideas! These look so packed with flavor!

    Reply
    • Denise says

      Posted on 8/21/15 at Posted on 8/21/15

      I am definitely loving make-ahead breakfasts...thanks, Jaren!

      Reply
  12. Michelle @ Blackberry Babe says

    Posted on 8/20/15 at Posted on 8/20/15

    I am such a zombie in the morning too. Love quick and easy breakfasts like this so I can grab it and eat it in the car!

    Reply
    • Denise says

      Posted on 8/21/15 at Posted on 8/21/15

      My mom always told me I'd 'grow out' of my anti-morning sentiments, but I sure haven't 😉 Thanks, Michelle!

      Reply
  13. Melanie | Melanie Makes says

    Posted on 8/20/15 at Posted on 8/20/15

    Love how protein packed these muffins are - perfect for a school morning!

    Reply
    • Denise says

      Posted on 8/21/15 at Posted on 8/21/15

      Totally! Thanks, Melanie 🙂

      Reply
  14. Danielle says

    Posted on 8/20/15 at Posted on 8/20/15

    I love having things in the freezer that I can just pop in the microwave or oven real quick to eat. These muffins look so delicious and I love that you used quinoa!

    Reply
    • Denise says

      Posted on 8/21/15 at Posted on 8/21/15

      Thanks, Danielle! I am going to do more freezer cooking, it just makes life *so* much easier 😉

      Reply
  15. Justine | Cooking and Beer says

    Posted on 8/20/15 at Posted on 8/20/15

    I have to tell you, I feel like I'm seeing egg muffins popping up all over the place lately! It must be that whole back-to-school thing going on, but seriously these are by far my favorite! They are so fun! Not boring and I love all of the ingredients! Pinned!

    Reply
    • Denise says

      Posted on 8/21/15 at Posted on 8/21/15

      I know! They all stole my idea...kidding! I wasn't super keen on just eggs in the muffin and I'm glad I added the quinoa and of course all the other fun stuff. THanks, Justine 🙂

      Reply
  16. Dani @ Dani California Cooks says

    Posted on 8/20/15 at Posted on 8/20/15

    Pinned immediately! Love the combination of healthy carbs/fats/protein. I may add spinach!

    Reply
    • Denise says

      Posted on 8/21/15 at Posted on 8/21/15

      Spinach sounds great! I did a version this morning with a cup of shredded zucchini (water squeezed out), and they turned out really well! Thanks, Dani!

      Reply
    • Ellie says

      Posted on 5/17/16 at Posted on 5/17/16

      me too first thing I thought that would be good. Leave out the mushrooms....and spring onions, instead of the white or red onions.

      Reply
      • Denise says

        Posted on 5/17/16 at Posted on 5/17/16

        Absolutely! Use this as a base and add your favorite veggies. 🙂 I hope you like them, Ellie!

        Reply
  17. Natalie @ Tastes Lovely says

    Posted on 8/20/15 at Posted on 8/20/15

    These sound so delicious! I am the worst about breakfast. It's nothing but cold cereal for me on weekdays. These would be much healthier. And I love that you added quinoa! I just bought the most insanely large bag of quinoa at Costco and can't go thru it fast enough. This will be a great way to use it up : )

    Reply
    • Denise says

      Posted on 8/21/15 at Posted on 8/21/15

      Oh me too! It has been peanut butter toast for SO LONG! I'm loving the little variety on breakfast 😉 Oh, and I love the quinoa they sell at Costco, I always ask my mom to get me some (we don't have a membership). It has the best texture! Thanks, Natalie!

      Reply
  18. Kacey @ The Cookie Writer says

    Posted on 8/20/15 at Posted on 8/20/15

    Love these!! My husband used to be creeped out by the idea of leftover/frozen eggs. Then he tried my daughter's leftover wrap in the fridge one day and thought the egg had even more flavour!! Now I have to make these for him 🙂

    Reply
    • Denise says

      Posted on 8/21/15 at Posted on 8/21/15

      Yeah, freezer eggs don't sound very appetizing to me either! Somehow in muffin form my brain doesn't think about them the same way 🙂 Thanks, Kacey!

      Reply
  19. Jen | Baked by an Introvert says

    Posted on 8/20/15 at Posted on 8/20/15

    These look fantastic! I'm all for a healthy grab and go breakfast.

    Reply
    • Denise says

      Posted on 8/21/15 at Posted on 8/21/15

      Me too! Thanks, Jen!

      Reply
  20. Jess @ Flying on Jess Fuel says

    Posted on 8/20/15 at Posted on 8/20/15

    One of my favorite quiches that I make all the time has quinoa in it! I love the texture and moisture it gives it! I will have to try this portable version-- the flavor combo sounds great. I LOOOVE sun-dried tomatoes!

    Reply
    • Denise says

      Posted on 8/21/15 at Posted on 8/21/15

      I've never had quinoa in a quiche before but now I'm going to have to try it! I liked the quinoa in the muffins because they weren't too eggy that way. Thanks, Jess!

      Reply
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Hi, I'm Annie

Meal prep took me from feeling constantly stressed out about meals to cool, collected and in control. I want to share this amazing and transformational habit with you, so you can feel in control, too! Read more ...

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